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573 Cards in this Set

  • Front
  • Back

Biosynthesis of RN Which of following statements describes a difference between replication of DNAand transcription of RNA?

Both strands of DNA are copied in replication, but usuallyonly one is copied in transcription.



Biosynthesis of 2 Which of following statements concerning RNA transcription is false?

Synthesis of RNA is as accurate as synthesis of DNA

Biosynthesis of 3 Which of following statements concerning RNA transcription is false?

Transcription requires the use of a primer.

Biosynthesis of 4 The enzyme principally responsible for RNA synthesis in Escherichia coli

is a multisubunit enzyme

Biosynthesis of 5 The end of the new mRNA molecule in E.coli. usually terminates in a string of A's

False

Biosynthesis of 6 Which of the following correctly describes a difference between RNA & DNApolymerases?

DNA polymerases usually require a primer (i.e., they can onlycontinue a strand, not start one), while most RNA polymerases do not.

How do the core enzyme and the holoenzyme of RNA polymerase differ in E. coli?

The holoenzyme includes the sigma (s) subunit, the coreenzyme does not.

Which of these terms does not describe the DNA strand used to direct RNA synthesis?

Coding strand

At what point does the sigma (s) subunit of RNA polymerasereleased from the core enzyme?

After transcription begins and about 10 nucleotides have been added to the RNA chain.

RNA synthesis begins at the base in the DNA sequence designated by the following number:

+1 (plus one)

What is the function of the sigma (s) subunit of RNA polymerase in E. coli?

It recognizes promoters where transcription should begin.

Which of the following is not a property of the sigma (s) subunit?

It stays with the RNA Pol throughout synthesis.

Which of the following is not part of the core promoter?

the UP element

The promoter site is

the site on DNA at which RNA polymerase binds to initiate transcription

Which of the following offers the best description of aPribnow box?

A promoter consensus sequence located at approximately -10.

Initiation of RNA biosynthesis involves

conversion of the closed-promoter complex to the open-promoter complex

Consensus sequences are

sequences that have many bases in common

What provides the energy for rho-dependent chain termination?

ATP hydrolysis distinct from any incorporation into thechain.

Minor differences in the consensus sequence for RNA Polymerase

can be exploited to vary the amount of mRNA which is synthesized from that gene.

Which of the following best describes the order of events at the promoter?

closed complex ® open complex ® transcription initiation

What provides the energy for the conversion from the open complex to chain elongation?

Torsional stress built into the separating DNA strands.

Chain termination occurs, invivo, when:

Either a hairpin loop forms or rho (r) is involved.

In prokaryotic RNA synthesis

inverted-repeat sequences in the DNA being transcribed canlead to termination

What is the need for a primer strand in transcription?

There is none.

Which is not associated with bacterial promoters?

3' antiterminator

Which of the following is true concerning the firstnucleotide incorporated into an RNA chain?

The first nucleotide incorporated into the RNA chain retainsits 5'-triphosphate

The weakness of A-U base pairs at the end of the RNA moleculemay help in dissociation of the new RNA product.

True

There is only one sigma subunit, since the same RNA Polymerase must bind to all genes in E.coli.

False

How do enhancers differ from promoters?

Enhancers do not bind RNA polymerase.

Which of the following is the best description of an operon?

A group of genes under the control of a common promoter.

Operons

are subject to positive or to negative control.

Which of the following influence the amount of expression of an operon?

Availability of the specific sigma factor for that operon.b. Howwell the Pribnow box conforms to the consensus sequence.c.Attenuation mechanisms.d.Presence of 3' 5' cyclic AMP.*e. All ofthese.

Which of the following doesnot influence the timingof expression of an operon?

Repressors

A mutation in the lac A gene would result in

normal operation of the lac operon, but with an alteration inthe proteins encoded by the lac A gene

Cyclic AMP affects transcription by

triggering the action of several protein factors

A single operon

usually contains all the enzymes which are specific for thesynthesis of a special biomolecule.

All of the following apply to attenuation mechanisms, except:

The rate of RNA synthesis is regulated by the conformation ofthe protein being synthesized.

Which of the conditions would result in the greatest amount of transcription of thelac operon?

IV


low high

Attenuation mechanisms rely on alternative secondarystructures forming in the mRNA.

True

Which of the following is not a characteristic of catabolite activator protein (CAP)?

the binding of CAP to DNA requires ATP hydrolysis

Which of the conditions would result in the least amount of transcription of the lac operon?

high low

Control of transcription in prokaryotes does not involve

leucine zipper proteins

Inducers for operons are often structurally related to theenzyme substrates of that operon.

True

Inducers allow for a system in which an enzyme is not madeunless it is needed.

True

The catabolite activator protein can overcome the effect of arepressor binding to the operon.

True

Which of the following is true about riboswitches:

They have a molecule sensing domain called an aptamerb. Thereare known pathogens that use riboswitches as part of their mechanismc. Theyrespond to specific molecules and control translation in a way that is oftensimilar to transcription attenuationd. Theycontain a sensing domain and a decision making domain*e. All ofthese

Which of the following statements about eukaryotic andprokaryotic RNA polymerases, is false?

Eukaryotic polymerases have the same number of subunits asprokaryotic ones.

Which enzyme transcribes genes encoding tRNA in eukaryotes?

RNA polymerase III

Which of the following isnot a key step in the activation of mRNA synthesis in eukaryotes?

Binding of RNA Pol I.

Which of the following statements about the various RNAPolymerases in eukaryotes is false?

Eukaryotic RNA polymerases are generally monomeric.

How do eukaryotic and prokaryotic RNA polymerases compare?

Despite their added complexity, eukaryotic and prokaryoticRNA polymerases are generally homologous.

Where is the TATA box located?

-25 region.

TATA-binding protein (TBP) is required for transcription by

Pol I.b. Pol II.c. PolIII.*d. all ofthese polymerases

Phosphorylation of the CTD of RNA polymerase II occurs duringwhich phase of transcription?

conversion from the closed complex to the open complex

Transcription in eukaryotes differs from RNA synthesis inprokaryotes

by having multiple RNA polymerases rather than one.

RNA polymerases from prokaryotes and eukaryotes

have sequence homology in catalytic subunits

A transcription factor is

a protein other than RNA polymerase that is involved intranscription.

Initiation of transcription in eukaryotes is primarilycontrolled

in the formation of the preinitiation complex

The eukaryotic TATA-binding protein (TBP) functions in amanner similar to

sigma (s) factor in E.coli.

Which of the following transcription factors is involved inthe elongation phase of eukaryotic transcription?

TFIIF

The elongation and termination phases of eukaryotictranscription

require several protein factors

Which of the following is not true?

RNA Pol IV is the primary RNA synthesizer in plants

The major difference between RNA initiation in eukaryotes andprokaryotes is the number of factors involved in the process.

True


One rather unusual transcription factor in eukaryotes haltsRNA synthesis to allow for repair of damaged DNA.

True

Response elements

are enhancers of transcription activated by metabolic factors

As in prokaryotes, the regulatory regions for eukaryoticgenes:

may be close to the genes they controlb. may beupstream of the genes they controlc. may bedownstream of the genes they control*d. All ofthese are true

Intracellular levels of cyclic AMP can affect thephosphorylation of proteins and enzymes as a secondary messenger.

True

RNA transcribed from the coding strand instead of thetemplate strand

is called antisense RNA.

Proteins that recognize DNA with specific base sequences are

more likely to bind to the major groove.

The leucine zipper is different from other DNA bindingdomains, since it requires the DNA-binding protein to form a dimer.

False

DNA binding domains are distinct from transcription-activationdomains.

True

Which of the following is not a structural motif encounteredin DNA-binding proteins?

b-barrel

CREB contains the following structural motif:

Leucine zipper

Which of the following best describes leucine zipper motifs?

They allow protein-protein interactions via hydrophobicbonds.

Which of the following isnot a common modification occurring after polymerization of RNA?

Addition of phosphate to the bases.

Alternative removal of exons from mRNA is important in whichof the following?

Troponins and other contractile proteins.b.Different types of collagen.c. Thedisease lupus.d.Alzheimer's disease.*e. All ofthese.

Capping of eukaryotic mRNA

occurs at the 5' end.

Polyadenylation of eukaryotic mRNA

occurs at the 3' end.

Which of the following RNAs is noted for having a"cloverleaf" structure?

tRNA

In eukaryotes, which of the following types of RNA undergosome base modification after polymerization of the monomers?

mRNAb. tRNAc. rRNAd. mRNAand tRNAe. mRNAand rRNA*f. all ofthese

The sequences in eukaryotic DNA known as introns are

the intervening sequences not expressed in the final sequenceof messenger RNA

A commonly encountered feature of transfer RNA synthesis is

the precursor of several tRNA molecules is transcribed in onelong polynucleotide sequence

Post-transcription processing of mRNA in prokaryotes isrequired.

False

The lariat mechanism has been demonstrated by observing thelariat structure using electron microscopy.

True

Alternative splicing of exons is a mechanism to get more than1 protein from the same gene.

True

Which ends of eukaryotic mRNA are protected from degradation?

Both ends

Which ends of prokaryotic mRNA are protected fromdegradation?

Neither end

Splicing reactions for exons involve the followingmechanisms, except:

Small nuclear RNAsb.Ribozymesc. Lariatmechanismsd.Participation of special G residues*e. All ofthese are involved in splicing reactions

Ribozymes, the catalytic activity of RNA, were firstdiscovered as part of the snRNA group.

True

Which category of ribozymes requires an external guanosinefrothier action?

Group I

Ribozymes

are involved in protein synthesis

Which of the following is true about micro RNAs?

They are a type of non-coding RNA

Non-coding RNAs are known to:

. bind to mRNA targeting them for destructionb. bind tomRNA preventing their translationc. promoteRNA silencing*d. all ofthese

Chpt 12

Chpt 12

Which category of RNA carries amino acids for the process oftranslation?

tRNA

The majority of protein synthesis occurs in the

cytoplasm

As in RNA and DNA synthesis, the synthesis of proteinsfollows the following steps, except:

Activation of monomersb.Initiationc.Elongationd.Termination*e. All ofthese are involved in all polymer synthesis

The template for protein synthesis is:

a mRNA strand

Which of the following statements concerning the genetic codeis false?

. Commas are used.

Wobble allows each codon to interact with more than one tRNA.

True

Which of the following isnot an advantage of degeneracy in the genetic code?

More than one amino acid can bind to a tRNA.

Inosine or hypoxanthine can wobble with all the followingbases, except:

. Ab. Cc. Td. U*e.Inosine can wobble with all of these bases.

Which of the following codons does not code for an amino acid?

UAA

Wobble allows a single codon to code for more than one aminoacid.

False

At which position on tRNA is the wobble base of the tripletanticodon?

1st position (5' letter)

Whattype of assay using tRNAs and ribosomes enabled complete determination of thegenetic code?

filter binding assays

Which of the following isnot a key advantage of wobble in the codon-anticodon reaction?

It allows for making more than one protein from the samecoding sequence.

Transfer RNAs contain an anti-codon loop meant to match (basepair) with a codon on an mRNA.

True

In the wobble phenomenon, the base that wobbles is found in

the tRNA.

How many codons are known for each amino acid?

1 to 6 depending on the nature of the amino acid

Exceptions to the universality of the genetic code have beenobserved in

mitochondria and 16 other organisms, including some algae andfungae

What is the maximum number of amino acids that can bespecified by a codon consisting of a sequence of two bases?

16

Which amino acids have unique codons?

trp, met

How many codons are possible in a system in which a sequenceof three bases specifies a single amino acid?

64

A tRNA was determined to have the following anticodonsequence:3'-GAI-5' (I represents the base hypoxanthine)Which of the following codons can form base pairs with this anticodon?

5'-CUA-3'b.5'-CUC-3'c.5'-CUU-3'*d. all ofthese

Using the genetic code, indicate which polypeptides would besynthesized if poly (UGG) were used as a synthetic mRNA?

poly(trp), poly(val), poly(gly)

The genetic code is said to be degenerate. This means that

many of the amino acids are coded for by different codons.

The process of amino acid activation

involves the formation of an ester bond between the aminoacid and tRNA

The initial step in the formation of an aminoacyl-tRNA is

activation of the amino acid by reaction with ATP

An aminoacyl-adenylate contains

an acid anhydride bond

Which of the following statements concerning tRNAs is false?

They are unique in that they are transcribed by DNApolymerases

Which of the following is not true?

aminoacyl-tRNA synthetases link amino acids to tRNAmolecules without the need for an energy source

Which of following best describes the two-step process foradding amino acids to tRNAs?

AA + ATP ® AA-AMP + PPi; AA-AMP + tRNA ® AA-tRNA + AMP

Activation of amino acids always takes place

in the cytoplasm

Which linkage best describes the covalent bond between anamino acid (AA) and its tRNA?

Carboxyl group of AA linked to 3' -OH of tRNA.

Amino acids linked to the 2'-end of a tRNA

are transferred to the 3' position prior to their use inprotein synthesis

Thestandard free energy change for the following reaction is about zero.amino acid + ATP + tRNA ® aminoacyl-tRNA + AMP + PPiThe driving force for this reaction in the cell is

the subsequent hydrolysis of pyrophosphate releases energy

Activation of amino acids

produces a pyrophosphate byproduct.

The amino acids are initially attached to either the 2' or 3'hydroxyl group of the tRNA.

True

Specificity of aminoacyl-tRNA synthetases is always based onthe anticodon.

False

The activating enzymes can actually remove wrong amino acidsattached to a tRNA.

True

Each tRNA molecule has a separate activating enzyme.

False

Which of the following isnot a function of elongation factors in E.coli?

Keep the ribosomal subunits bound together.

The tRNAs may bind to the standard stop codons

in cellular organelles which use a modified genetic code.b. toaccommodate the tRNA for the unusual amino acid selenocysteine.c. whenthe anticodon in a tRNA mutates to a sequence which can bind.*d. All ofthese

Which antibiotic confirmed that the growing peptide chain istransferred to the amino group of the incoming tRNA?

Puromycin

In bacteria, each mRNA will bind to only one ribosome at atime.

False

The mRNA must contain the following to allow for initiationof protein synthesis in E. coli.

A Shine-Delgarno sequence.

Which of the following is not required for the elongationphase of protein synthesis?

fmet-tRNAfmet

Which of the following isnot a function of termination factors in E. coli?

Cause the ribosomal subunits to dissociate.

Which of the following isnot a function of initiation factors in E.coli?

Lead the initial tRNA to its correct position on the largesubunit of the ribosome.

An aminoacyl-tRNA is initially bound to the ribosome

at the A site on the 50S subunit

After peptide bond formation takes place, what step isnecessary for continuation of protein synthesis?

translocation of the ribosome

In protein synthesis formation of new peptide bonds iscatalyzed by

peptidyl transferase

What is the mode of action of puromycin in the inhibition ofprotein synthesis?

termination of the growing polypeptide chain

The match between codon and anticodon is one of the manyproofreading aspects of protein synthesis.

True

At what point does the formylation reaction take place toproduce N-formylmethionine?

After methionine has been added to a specific tRNA.

N-formyl methionine

can be found attached to some proteins in E. coli.

What is the start codon on the mRNA for prokaryotictranslation?

AUG

The formylation of methionine in prokaryotes

depends on two different tRNAs, where methionine can beformylated when bound to one form and not the other.

Which of the following is not a prokaryotic elongationfactor?

EF-Ts

What happens when a stop codon is reached by a ribosome (inthe A site)?

A termination protein binds to the codon and is used torelease the growing peptide from the P site tRNA. The ribosome then is likelyto dissociate.

Which of the following best describes the assembly process toinitiate translation in prokaryotes?

. small subunit associates with mRNA; IF w/ bound NTP bringsin first f-Met-tRNA; IF then hydrolyses bound NTP; large subunit associates

Which of the following is necessary for chain termination inprotein synthesis?

termination codons of mRNAb. releasefactorsc. GTP*d. all ofthese

A polysome is

a complex consisting of one mRNA to which several ribosomesare attached

The ribosome is actually a ribozyme.

True

In bacteria, translation of the mRNA begins

during the synthesis of the mRNA.

A Shine-Dalgarno Sequence is a

sequence of nucleotides in an mRNA that interacts with thesmall subunit of a ribosome to begin translation.

Protein synthesis in prokaryotes always starts with

a formylmethionine residue

During elongation, tRNA binds initially to the

"A" site on the ribosome.

The first tRNA (bearing fmet) binds to the

"P" site on the ribosome.

Under certain conditions, tRNAs can bind to the standard stopcodons.

True

How do eukaryotic and prokaryotic translation compare?

Eukaryotes utilize very different protein factors during theprocess but the ribosomes are homologous.

The actual functions of the factors in eukaryotes are similarto the functions of these factors in bacteria.

True

The final form of mRNA in eukaryotes has all these features, except:

The mature, active mRNA contains introns.

How do eukaryotic ribosomes prevent false starts atinappropriate parts of the mRNA?

There is a consensus sequence, called the Kozak sequence,surrounding the start codon in eukaryotes.

Which of the following is true concerning protein synthesisand memory?

Inhibition of protein synthesis in eukaryotes leads to lackof long term memory

Which of the following is associated with post-translationalprocessing of proteins?

Folding into the 3-dimensional shapeb.Breaking large proteins into several components with differing functionsc. Formingdisulfide bondsd.Modification of specific amino acids*e. All ofthese

Leader sequences for protein transport to specific organellesare removed by proteases associated with the:

endoplasmic reticulum

Chaperones assist in protein folding by preventingaggregation of proteins before folding is completed.

True

There is no codon for the amino acid hydroxyproline, but thisamino acid is a prominent feature of collagen structure. Which of the followingis a likely explanation?

Proline is covalently modified to give hydroxyproline aftertranslation.

Degradation of proteins

frequently makes use of proteasomes

The protein which marks proteins for degradation is called:

Ubiquitin

Which of the following is not true concerning silent mutations?

Only changes in base sequence that lead to a different aminoacid can have an effect on the organism

HIF-1 is related to which process?

How we adapt to high altitude

Chpt 13

Chpt 13

Which of the following best describes electrophoretic gelsused for DNA?

Most separations are done horizontally, while sequencing gelsare typically run vertically.

Migration of DNA during electrophoresis is based.

mostly on the size of the molecule, since the ratio of chargeto mass is approximately the same, no matter how large the DNA is.

The application of gel electrophoresis (PAGE) in DNAsequencing

depends on separation of similar charge/mass ratio on thebasis of size.

Which of the following parameters affects the distance DNAmolecules migrate during electrophoresis, at pH = 8?

The mass of the DNAb. Thetotal ionic charge on the DNA moleculec. Thefact that each nucleotide contributes one negative charge at this pH.d. Theconcentration of agarose or polyacrylamide in the gel.*e. All ofthese features control the distance the DNA migrates.

Ethidium bromide slips between the bases of DNA giving itfluorescent properties that differ from those observed when it is free insolution.

True

Fluorescence works because the fluorescent molecule

absorbs light at one wavelength and emits light at a longerwavelength.

When fluorescence detection methods are used in biotechnologythey

do not present the hazards associated with radioactivity

A highly useful method for determining the presence ofhydrolyzed fragments of DNA separated by electrophoresis is

autoradiography

Fluorescent techniques can detect concentrations as low as

picomolar (10-12 M).

Which of the following are methods used to determine wherethe DNA bands are located on an electrophoresis gel?

a. Radioactivityb.Fluorescencec. Dyeswhich bind to DNAd.Luminescence*e. All ofthese can visualize the DNA

Fluorescence and other luminescent methods of visualizing bandsoffer these advantages over methods dependent on radioactivity.

These methods are both more sensitive and require no speciallicense.

SyBr green and SyBr gold were developed because

ethidium bromide is carcinogenic

Restrictionenzymes are especially useful for genetic recombination work for all of thefollowing reasons, except:

They cut DNA in the middle of specific sequences.b. Theycut DNA independent of the source of the DNA.c. Theyoften generate single stranded tails or "sticky ends".d. Thereare a large variety of them commercially available.*e. All ofthese traits make restriction enzymes useful.

The "natural" function of restriction endonucleasesis to

protect bacterial cells from invasion by viruses(bacteriophages).

Which of the following statements concerning restrictionendonucleases is true?

They can produce "sticky ends".

A palindrome is

a sequence that reads the same from left to right or fromright to left

An isoschizomer is a(n)

a restriction enzyme that has the same sequence specificityas another restriction enzyme from a different organism

A single clone of interest can be distinguished from othersin a mixture of clones by

a specific probe, usually a labeled complementary DNA.

Enzymes that seal nicks in DNA are called

ligases.

A plasmid is

a small circular DNA that is not part of a bacterialchromosome.

Recombinant DNA molecules contain covalently linked segmentsderived from two or more sources.

True

The following steps are all involved in geneticrecombination:

4 ® 2 ® 3 ® 5 ® 1

Which of the following are methods by which bacteria can beinduced to take up recombinant DNA molecules?

a. Heat shock.b. DNA"guns" which spray the DNA at very high speeds.c.Electroporationd. Phageor virus infection.*e. All ofthese are used to transform bacteria.

Multi-cloning sites ("poly-linkers") in mostcommercially available plasmids offer all the following advantages over theearlier plasmids used in genetic recombination except:

They assure that only the desired DNA will be inserted intothe plasmid.

In recombinant DNA technology

a. vectors are used as carriers for recombinant genes.b. it ispossible to insert eukaryotic genes into prokaryotic DNA.c. foreignDNA is frequently inserted into a bacterial plasmid.*d. all ofthese

The presence of bacterial or viral clones is detectedexperimentally by

the presence of colonies or plaques on a suitably preparedPetri dish.

Suitable vectors for cloning of recombinant DNA can be

both of these

Which of the following isnot required in order for a plasmid to be used in genetic recombination?

A poly-cloning site or multi-cloning site for gene insertion.

Cells that contain a "blue/white screening" plasmidthat has an added gene are recognized by the method:

The colonies lack a blue color.

During the simplest type of genetic recombination, there is a____ chance that the gene will be inserted in the correct direction.

50%

Recombined bacteriophage particles are easy to isolate, sincehigh concentration of phage will be found in each of the bacterial coloniesthat grow on the medium used for screening.

False

DNA into the BamHIsite, the recombinant plasmid would lackwhich of the following properties?

It would be resistant to the antibiotic tetracycline.

If a recombinant plasmid were obtained by inserting DNA intothe EcoRV site, and the proteincorresponding to the recombinant gene were expressed, which of the followingstatements would be false?

The plasmid will not be able to replicate autonomously.

DNA into the AflIIIsite, the recombinant plasmid would lackwhich of the following properties?

It can replicate autonomously.

DNA into the BamHIsite, screening for the recombinant plasmid can be done by the followingtechnique.

Plate on nutrient agar plates that contain ampicillin,followed by replica plating on tetracycline.

If the region between the 2 sites for HgiEII were deleted, the resulting plasmid

would be useless as it would lack an origin of replication.

If the plasmid were completely digested with the tworestriction enzymes BamHI and HgiEII, the resulting fragments would bethis large:

1920, 1682 and 761 base pairs long.

Antibiotic-resistance genes in vectors are often used asselectable markers.

True

A multiple clonic site is also known as:

a polylinker

DNA fragment for analysis?

HindIII

Neglecting any discussion of whether it's a good or badchoice, I attempt to insert a gene fragment into the HindIII site and transform bacteria with the plasmid. How can Itell which transformants have the insert?

The bacteria will be able to grow in the presence ofampicillin, and they will be white.

When viruses are used as vectors in gene therapy

they can cause unexpected difficulties

Genetic engineering which recombines DNA from differentspecies is

. a molecular extension of traditional cross-breedingmethods.

How is human insulin produced by genetically engineeredbacteria?

DNA that codes for each of the two polypeptide chains isintroduced into two different populations of bacteria

Genetic recombination occurs in nature.

True

How does an expression vector differ from a regular cloningvector?

An expression vector has the ability to have the inserted DNAbe transcribed.

Which of the following plants have been genetically modified?

a. Soybeansb. Corn.c. Cottond.Tomatoes*e. All ofthese plants have been genetically modified.

In gene therapy

cells of specific tissues are altered in a way thatalleviates the effects of a disease.

While a large majority of people are opposed to somatic genetherapy, a large number support the use of germ-cell gene therapy.

False

One major obstacle to using bacteria to produce humanproteins is because addition of sugar residues to the proteins, glycosylation,never occurs properly.

True

One major obstacle to using bacteria to produce humanproteins is bacteria do not have the cellular apparatus to splice introns outof mRNA.

True

Which of the following proteins has been successfullyproduced through genetic recombination?

a. insulinb. humangrowth hormonec. tissueplasminogen activatord.erythropoietin*e. All ofthe above proteins have been produced successfully.

Which of the following isnot a potential benefit of creating a fusion protein in geneticengineering?

. The protein is less likely to be antigenic.

Genetic engineering

a. is being used to produce improved crop plants.b. mayprovide therapy for diseases of genetic origin.

Which of the following statements about plants which containthe recombinant form of the gene from Bacillusthuringiensis (Bt gene), is true?

a. These plants have a natural resistance to caterpillars.b. Thegene is expressed in all the plant tissues.c. Sincethe gene is expressed in the pollen of the plant, there is concern about thegene harming beneficial insects.d. It islikely that some insects will mutate to become resistant to the Bt geneproduct.*e. All ofthese statements are true.

Which of the following conditions is an example of howgenetic engineering is currently used to increase food production?

a. Genetically modified plants have been developed that areresistant to herbicides.b.Genetically modified plants have been developed which contain a gene thatconfers a natural resistance to certain insects.c.Hormones are given to cows to increase milk production.d.Genetically modified plants have been developed which are resistant to frost.*e. All ofthese are examples of genetic engineering in agriculture.

Modern genetic engineering allows the following manipulation,which was not available using traditional breeding methods:

It is now possible to include genes from different species,or even different kingdoms in the same organism.

Which of the following conditions is not a requirement to assure production of a protein when aplasmid is being designed to express a eukaryotic protein in a bacterium?

Differences in the genetic code between eukaryotes andprokaryotes must be accommodated.

Which of the following proteins are produced by recombinantDNA technology but have had their purposes subverted for improving athleticperforrmance?

. Erythropoietin and Human Growth Hormone

A gene from Bacillusthuringiensis (Bt) is used to make plants resistant against all insectswhich might feed on the plant.

False

The use of the Bt gene is prohibited in corn plants.

False

Sometimes DNA probes are used to prove that a gene has beenincorporated into a eukaryotic genome. The following are all steps used in sucha procedure, except:

Elution of the hybridized DNA from the gel for analysis.

The "c" in cDNA stands for this word:

Complementary

An expression library contains genes corresponding to all ofthe following, except:

An expression library could be any of these choices.

A DNA library consists of

cDNA library

Expression libraries are most often made from

. the mRNA found with a given cell or tissue.

In the polymerase chain reaction

it is possible to amplify small amounts of DNA withoutcloning.

The polymerase chain reaction requires

a. primers complementary to the ends of the sequence to beamplifiedb. carefultemperature control

The following item was the most important one for thedevelopment of PCR as a commercially successful and widely-used procedure:

Taq DNA Polymerase.

Advantages of the Polymerase Chain Reaction include all ofthese, except:

a. The reaction is specific for certain sequences in the DNA.b. Onlysmall amounts of template are needed.c. Resultscan be obtained with DNA that is old or partially degraded.d. All theproducts from a specific part of the DNA will be the same size.*e. All ofthese are advantages of PCRÒ.

The best primers for the PCR reaction have the followingfeature:

. They should anneal rapidly, before the larger DNA strandsreanneal.

Which of the following is a unique feature of qPCR comparedto the original PCR?

In qPCR, the speed with which the DNA is produced is used toestimate how much of the original template was in the reaction vessel

The RFLP technique

is used on the DNA of organisms that have two sets ofchromosomes

The usefulness of blotting techniques in molecular biology isthat

transferred material is in the same relative position on thedisk as on the original sample

The following blotting procedure is named for the scientistwho invented it:

Southern

Which of the following is true?

DNA evidence is easier to use to exclude a putative matchthan to include it

Slight differences in a given gene between the two homologouschromosomes are called

alleles

Forensic uses of DNA to identify victims or criminals exploitthe following trait in DNA:

Differences in sizes of DNA fragments (RFLPs).

When fluorescent markers are used for DNA sequencing:

computer analysis can help in the detection of sequencinganalysis at a faster rate

A feature of the Sanger-Coulson method for DNA sequencing is

direct "reading" of the sequence of bases

In DNA sequencing, fragments to be analyzed are produced by

selective interruption of DNA synthesis

RNA is sequenced by

sequencing the complementary DNA produced by the reversetranscriptase reaction

A proteome is

a collection of all the proteins produced in a given cell ortissue.

Microarrays allow the analysis of thousands of samples of DNAor protein to be performed simultaneously.

True

A transcriptome is

a collection of all the genes being transcribed in a givencell or tissue at a given time.

In a metabolic study using microarrays, a yellow dotrepresents the location of DNA on the microarray:

for which mRNA was produced in both the control and the testcase

Chpt 14

Chpt 14

Which of the following classes of organisms can virusesinfect?

a. bacteriab. plantsc. animals*d. All ofthese

The capsid of a virus is composed of

protein

Colds are commonly caused by

rhinoviruses

What is the function of protein spikes on a virus?

They help the virus attach to the host

The large-T protein of SV40 is an example of a(n)

oncogene

A virus life cycle that involves the incorporation of theviral DNA into the host chromosome is

lysogeny

A viral genome is

may be double or single stranded.

With the influenza virus, there are 16 types of ______

hemaglutinin (HA) subtypes

What happens to the DNA copy of the retroviral RNA genomeafter it is produced?

It is incorporated into the host's DNA.

Which of the following best describes the function of reversetranscriptase?

It uses an RNA template to make a double-stranded DNA

Which of the following is not a feature common to all retroviruses?

Sarcoma Oncogenes

Clonal selection is the ability of the immune system to control the proliferation of antigen-specific cells, since it has a mechanism to recognize which cells interact with that antigen.

True

The term antibody is essentially interchangeable with

immunoglobulin

Antibodies have two binding sites to react with antigens.

True

Which of the following doesnot arise from a defect in the immune system?

Sugar intolerance

The first vaccine was made against

smallpox

Which of the following cell types engulf invaders and display portions of their proteins to other cells?

dendritic cells

Dendritic cells

display antigens associated with MHC proteins

Which of the following cell types kills cells that have been infected by viruses or that are cancerous?

NK cells

The designation of white blood cells as T cells and B cells refers to whether the cells develop primarily in the Thymus gland or the Bone marrow.

True

Which of the following descriptions of T cells is true?

They produce interleukins

Which of the following cells actually makes antibodies?

B cells

An epitope is

a binding site for an antigen on an antibody

Antibodies are the most variable protein sequences in the human body.

True

More than one type of antigen can bind to an antibody, butthere is only one type of antibody for each antigen.

False

Monoclonal antibodies arise from proliferation of a single Bcell.

True

Hybridomas, which produce monoclonal antibodies, are made by fusing cells of the immune system with

cancerous cells

Which of the following contributes to the variability of the immunoglobulins?

a. A variety of different DNA sequences are physicallyattached together to generate a huge number of different antibody genes.b. Thelinking regions between these DNA sequences are also highly variable.c. Thesynthesis of mRNA in the antibody cells is very variable, producing manydifferent proteins from one gene.d. Thereare several hundred to one thousand different genes for the variable part ofthe antibody sequence.*e. All ofthese mechanisms contribute to the variety of antibodies in the immune system.

Which of the following is an example of an autoimmunedisease?

a.rheumatoid arthritisb. lupusc. someforms of diabetes*d. all ofthese

Viruses can be genetically engineered to specifically targetcancer cells.

True

The ability of cancer cells to travel to other parts of thebody and produce new tumors is called

metastasis

Which of the following genes in normal cells can be relatedto oncogenes?

Oncogenes include examples of all of these.

Proteins which inhibit transcription of genes that would cause increased replication are called

tumor suppressors

The protein called p53 is especially important in cancerbecause:

Protein p53 can prevent cells from dividing and cause toenter programmed cell death.

Herceptin is a

drug designed to fight a specific type of breast cancer

Chpt 15

Chpt 15

Which of the following statements concerning the free energychange (DG) is false?

The rate of a reaction can be determined from the energychange.

The standard state of a solution is taken as

1 molar concentration

Consider this rxn which has a DG° = +0.4 kJ/mol.A + B « C + D1 M A, 1 M B, 0.1 M C and 0.1 M D are added to a container at room temperature.Which of the following statements is true?

The reaction will proceed in the forward direction to reach equilibrium.

Consider this rxn which has a DG° = +0.4 kJ/mol.succinate + FAD « fumarate + FADH21 mM of each compound are mixed & the reaction is allowed to come toequilibrium. Which statement is correct about the resulting concentration ofFAD at equilibrium?

[FAD] > [FADH2]

Consider this rxn which has a DG° = +0.4 kJ/mol.A + B « C + D1 M A, 1 M B, 0.1 M C and 0.1 M D are added to a container at room temperature.Which of the following statements is true?

DG < 0 (i.e., it's negative)

Which of the following isnot true concerning standard states?

For pure liquids, the standard state is 1M

I am performing a reaction, A ® B, with DG°' = -0.3 kJ/mol. Istart the reaction with 10 mM A and no B. After allowing the reaction toproceed for 24 hrs at room temperature and atmospheric pressure, I analyze asample of the reaction mix to find I now have 1 mM A and 9 mM B. Which of thefollowing conclusions should I make?

I must've screwed up; there's no way I could get that resultwith that DG°'

I am performing a reaction, A ® B, with DG°' = -5000 kJ/mol.I start the reaction with 10 mM A and no B. After allowing the reaction toproceed for 24 hrs at room temperature and atmospheric pressure, I analyze asample of the reaction mix to find I now have 8 mM A and 2 mM B. Which of thefollowing conclusions should I make?

I should come back again later; equilibrium has not yet beenreached.

Biochemists use a modified value for standard DG valuesbecause

the pH in living systems is seldom, if ever, near 0.

Which best describes the DG for hydrolysis of creatine phosphate under cellularconditions in which the concentration of creatine phosphate, creatine, andphosphate all equal 1 mM at 25°C. The DG° for the hydrolysis of creatinephosphate at 25°C is -43 kJ/mol.

DG < -43 kJ/mol

By definition, a spontaneous reaction is one in which

energy is released.

The standard state usually used in biochemistry (DG°')includes

all concentrations at 1 M, except for [H+], which is10-7 M.

"Metabolism" refers to

a. the breakdown of larger molecules into smaller ones.b. theproduction of larger molecules from smaller ones.

The production of larger molecules from smaller ones iscalled

anabolism

In general, catabolism

releases energy

In general, catabolism

is an oxidative process that releases energy

Which of the following statements apply to anabolism?

a. proceeds in stagesb.requires energyc.requires reducing agents*d. all ofthese

"Oxidation" refers to

the loss of electrons

An oxidizing agent

gains electrons

During reduction

electrons are lost.

In general, the anabolic pathways tend to involve oxidationreactions.

False

Which of the following is not true?

Molecular oxygen is always a substrate in oxidationreactions.

Which of the following coenzymes is not a carrier of electrons in biological redox reactions?

Coenzyme A

In biological redox reactions, hydrogen ions are usuallytransferred along with electrons.

True

Which of the following coenzymes is derived from riboflavin?

FAD

Which of the following is not a part of FAD?

nicotinamide

The conversion of NAD+ to NADH is an example of reduction because

the pyridine ring gains electrons (and a hydrogen)

In the coenzyme FAD the site to which electrons aretransferred is

a nitrogen-containing ring system

What happens to the entropy when ATP is hydrolysed to ADP?

Entropy increases

The oxidation of nutrients supplies the energy to produceATP.

True

In order to drive the synthesis of ATP, the hydrolysis of anorganic phosphate

must have a higher free energy change.

Considerthese reactions: ATP ® ADP + Pi DG°' = -31 kJ/mol glucose-6-phosphate ® glucose + Pi DG°' = -13 kJ/mol glucose + ATP ® glucose-6-phosphate + ADP DG°' = ? What is the DG°' of the last reaction?

-18 kJ/m

ATP is a good source of energy to run metabolic reactions forall the following reasons, except:

The sugar group is very reactive.

The body allows energy consuming reactions to occur bycoupling them with reactions which have a negative DG.

True

The number of degrees of freedom a molecule has is related tothe numbers of resonant structures it has.

True

What happens to the entropy of a molecule as the number ofresonance structures increases?

Entropy also increases

Many cells oxidize fatty acids to produce ATP. If no ATP wereproduced, the DG°' of this process would be

a larger negative number

When we say that the efficiency of glycolysis is about 33% wemean that

the energy used to phosphorylate 2 ATP is 33% of the energyreleased in the process

The energy released during metabolism of nutrients can beused to synthesize ATP from ADP and phosphate.

True

In order to initiate many metabolic pathways it is necessaryto activate the starting materials.

True

If the reaction A ® B has DG = +25 Joule/mol and the reactionB ® C has DG = -15 Joule/mol, the overall energy change A ® C will be

+10 Joule/mol

Which of the following are examples of endergonic processes?

protein synthesis and active transport

Which of the following are examples of exergonic processes?

oxidation of fats and of carbohydrates

The phosphorylation of ADP to produce ATP is endergonic because

a negatively charged ion is bonded to a molecule that alreadycarries a negative charge

Spontaneous reaction always occurs at a relatively fast rate.

False

The efficiency of aerobic metabolism is greater than that ofanaerobic metabolism even though much more energy is released in aerobic thanin anaerobic metabolism because

aerobic metabolism traps much more energy in the form of ATPthan does anaerobic metabolism

The hydrolysis of ATP can be used to drive reactions thathave a DG°' that is

less than +5 kJ/mol

The linking of an exergonic reaction to drive an endergonicreaction is called:

coupling

What happens to the entropy when ATP is hydrolysed to ADP?

Entropy increases

In metabolism the term "activation" refers to

conversion of a component of a metabolic pathway into are active compound.

An example of an activation step in metabolism is

the formation of an acyl derivative of coenzyme A.

Which of the followingis not a mechanism used to activate substrates for furthermetabolism?

Hydrolyzing a polymer into its component monomers.

Metabolism takes place in stages

and allows for efficient production and use of energy

Chpt 16

Chpt 16

Which of the following monosaccharides is a ketose?

fructose

Haworth projection formulas

a. arerepresentations of the cyclic form of sugarsb. canshow the distinction between the a and b anomers

Which of the following isnot a function of carbohydrates?

They are catalytic components of enzymes.

How many carbon atoms are in the simplest carbohydrates?

3

The simplest ketotriose is

dihydroxyacetone

Mirror image stereoisomers are called

enantiomers

The simplest aldotriose is:

glyceraldehyde

In a Fischer projection, which chiral carbon determines whether the sugar is the D- or the L-isomer?

highest numbered asymmetric carbon atom

For the a anomer of a D-sugar, the anomeric hydroxyl in aHaworth projection

has a downward projection (on the opposite side from theterminal CH2OHgroup).

Diastereomers are

non-mirror-image, nonsuperimposable stereoisomers.

Epimers are

stereoisomers that differ from each other in their configuration at a single carbon atom.

D-erythrose is to D-ribose as D-ribose is to:

D-allose

How many enantiomeric pairs are possible for a aldohexose?

8

Sugars which differ in chirality only around one carbon aremost specifically called

epimers

Aldoses can form which type of cyclic structure?

Hemiacetal

The cyclic form of sugars

has one more chiral center (the anomeric carbon) than theopen-chain form.

Epimers of D-Glucose include:

L-Idose and D-Galactose

Diastereoisomers of D-Glucose include all of these, except:

D-Fructose

Isomers of sugars in which the position of ketone andaldehyde groups have been changed are called

a. anomers.b.diastereoisomers.c.enantiomers.d.epimers.*e. noneof these

Which carbon of the open-chain form of a sugar becomes theanomeric carbon in the cyclic form?

the carbonyl carbon

The a and b forms of the same sugar are called

anomers

A pyranose is a sugar that

contains a six-membered ring as part of its cyclic structure.

A furanose is a sugar that

contains a five-membered ring as part of its cyclicstructure.

For a D-sugar, any group that is written to the right of thecarbon in a Fischer projection

has a downward projection in a Haworth projection.

Which of the following groups is produced when an aldehyde isoxidized?

carboxyl

A lactone is a cyclic

ester

Which of the following compounds is produced by oxidation ofan aldose in the cyclic form?

a lactone

Two samples containing identical mixtures of sugars areanalyzed, one using Tollen's reagent, the other with glucose oxidase. Whichwill give a stronger reaction?

Tollen's reagent

The conversion of a sugar's carbonyl to an alcohol is

a reduction reaction

Deoxyribose is best described as a(n):

glycoside

When monosaccharides are bonded together

a. one H2O molecule is lost for each new link formed.b.oligosaccharides are formed by combining a few monosaccharides.c.polysaccharides are formed by combining many monosaccharides.*d. all ofthese

Which of the following best describes the glycosidic bond inthe disaccharide shown?

a(2-4)

Glycosidic bonds from sugars

may link to the other molecule through either an oxygen or anitrogen atom

Which of the following statements concerning sugar polymersis false?

Linear polymers are more water-soluble than branched ones

Glycosidic linkages between monosaccharide units may varybased on

a. theanomeric form of the cyclic structure, i.e.,a or b.b. which-OH group is involved.

Which of the following is true concerning the moleculepictured?

It is not a reducing sugar because the anomeric hydroxyl ismethlyated

Common table sugar is

sucrose

Sucrose is composed of the following simple sugars:

glucose and fructose

Maltose is composed of the following simple sugars:

glucose only

The difference between cellobiose and maltose is:

one has an á linkage and the other a â linkage

Which of the following isnot a reducing sugar?

sucrose

Which of the following artificial sweeteners is a chemicalderivative of sucrose?

sucralose

Lactose is composed of the following simple sugars:

glucose only

The following sugar is also called milk sugar:

Lactose

The following sugar is also called fruit sugar:

Fructose

The following sugar is also called blood sugar:

Glucose

Which of the following molecules is a disaccharide?

lactose

Lactose intolerance

arises from inability to metabolize the disaccharide lactose

Which of the following disaccharides cannot be digested by mammals?

cellobiose

Which of the following statements associated with celluloseis false?

Most animals can easily digest this compound.

Cellulose is indigestible to most animals because

animals do not have the enzymes needed to hydrolyze theb-glycosidic linkages between the monomer units

Humans are not able to digest cellulose as a food sourcebecause:

Cellulose is insoluble and we lack the enzyme to break the blinkage in the cellulose.

In bacterial cell walls

peptides form crosslinks between polysaccharides

Which of the following molecules have the highest degree ofa[1-6] branching linkages

Glycogen

A polysaccharide. Whichlettered subunit is the nonreducing end?

There is more than one nonreducing end on this carbohydrate.

A major difference between amylose and amylopectin is that

amylopectin is branched and amylose is not

The linkage between the glucose residues in amylopectin andglycogen is:

For the main chain a (1 ® 4) and a (1 ® 6) for the branches

Glycogen is

a highly branched polysaccharide found in animals

Which of the following has only a[1-4] linkages and no a[1-6]linkages

Amylose

Glycogen has a similar structure to amylopectin, but is lesshighly branched.

False

Glycogen breakdown proceeds from the nonreducing ends.

True

Glycogen is sometimes called animal starch

True

Plant starch includes amylopectin and cellulose

False

A bacterial cell wall is composed of:

A polysaccharide consisting of 2 types of monosaccharideunits and cross-linking oligopeptides.

There are two forms of starch:

amylose, which is a linear polysaccharide, and amylopectin,which is highly branched

The blue color in a well-known test for the presence ofstarches is due to

the formation of a complex between iodine and amylose

Amino or acid derivatives of sugars are very important inwhich of the following biological functions?

a. Structural rolesb.Lubricating fluidsc. Cellsurface sugars used in cell identityd. Bothstructural roles and lubricating fluids.*e. All ofthe above are functions of amino and acid sugar derivatives.

Cell walls

are found in plants and bacteria, but have different chemicalcompositions

One major difference between bacterial and plant cell wallsis that bacterial cell walls have polysaccharides that are crosslinked bypeptides.

True

Insoluble fiber in the diet is better at binding toxicsubstances than soluble fiber.

False

The most common biopolymer on earth is this carbohydrate:

Cellulose

Insoluble fiber in the diet is better at better at providingbulk and stimulating peristaltic action than soluble fiber.

True

Polysaccharides used in cell wall structure contributerigidity to the wall due to covalent cross-linking between the fibers.

False

Chitin, which forms the exoskeletons of insects, is composedof

b(1-4) linked N-acetylglucosamine residues

One advantage of branched sugar polymers is the availabilityof more ends for chemical reaction.

True

Which of the following statements concerning plant cell wallsis false?

They contain large amounts of protein.

Blood typing depends on

the nature of the oligosaccharide portion of glycoproteins onthe surface of red blood cells

Cartilage and mucous are both slippery because:

Both charge repulsion of acidic groups and the sticky natureof sugars.

Glycoproteins

are proteins to which sugars are covalently bonded

The main difference, on the surface of a red blood cell,between the A-B-O major blood groups depends on

the presence or absence of a certain sugar.

Which of the following is true about the ABO blood groups?

all three of the blood groups have an á-L-fucose groupattached

Chpt 17

Chpt 17

Glycolysis

does not require O2 togenerate energy.

The fate of pyruvate produced during glycolysis dependsprimarily on the availability of

molecular oxygen.

In aerobic metabolism, what is the fate of pyruvate producedby glycolysis?

Pyruvate loses carbon dioxide, and the remaining two carbonatoms become linked to coenzyme A.

In humans, pyruvate can be converted to

acetyl-CoA and lactate.

Which of the following is not an end product of glucosemetabolism via either aerobic or anaerobic means?

fructose

What is the net ATP yield per glucose during glycolysis?

2

In the conversion of glucose to pyruvate, how many of theactual steps involve electron transfer?

1

The order of compounds in the conversion of glucose topyruvic acid is as follows: (PEP = phosphoenolpyruvate)

Fructose-6-phosphate, fructose-bisphosphate, 1,3-phosphoglyceric acid, 3-phosphoglyceric acid,PEP.

Which of the following is not true?

Corn is the only source of biofuels

Which of the following terms describes an enzyme thattransfers a phosphate group from ATP to a substrate?

kinase

The DG values for glycolytic reactions at physiologicalconditions may be exergonic, even though the DG°' at "standard"conditions, may be endergonic.

True

The reactions where glucose is converted to glucose6-phosphate and fructose 6-phosphate is converted to fructose 1,5-bisphosphateare examples of:

a. exergonic reactionsb. primingreactionsc. phosphorylationreactionsd. kinasereactions*e. all ofthese

The phosphorylation of glucose to glucose 6-phosphate

is an endergonic reaction that takes place because it iscoupled to the exergonic hydrolysis of ATP.

The enzyme glucokinase

specifically phosphorylates glucose rather than other sugars.

Which enzyme catalyzes the reaction shown?

an isomerase

The binding of glucose to hexokinase

is an example of induced-fit binding of a substrate to theactive site of an enzyme.

The phosphorylation of fructose 6-phosphate to fructose-1,6-bisphosphate is the committed step inglycolysis because

fructose 1,6-bisphosphatecan undergo no other reactions than those of glycolysis.

Which of the following sugars can be a substrate forhexokinase?

a. glucoseb.fructosec. mannose*d. all ofthese

Which of the following enzymes interconverts an aldose and aketose?

isomerase

Which enzyme is the key regulatory enzyme in glycolysis?

Phosphofructokinase

Which of the following exercise(s) allosteric control in thereaction of phosphofructokinase?

a. ATPb.fructose 2,6-bisphosphate

The reaction of fructose 1,6-bisphosphate to give glyceraldehyde-3-phosphate anddihydroxyacetone phosphate is an example of

a reverse aldol condensation.

The equilibrium for isomerization of dihydroxyacetonephosphate to glyceraldehyde-3-phosphate is favored because

glyceraldehyde-3-phosphate is being continuously drained offfor the subsequent reaction in the glycolytic pathway

The isomerization of dihydroxyacetone phosphate to giveglyceraldehyde 3-phosphate

is catalyzed by the enzyme triose phosphate isomerase.

The step that commits the cell to metabolize glucose iscatalyzed by

phosphofructokinase

Theequilibrium for the formation of glyceraldehyde-3-phosphate fromdihydroxyacetone phosphate is driven by

having the product of the reaction continuously consumed.

Which of the following enzymes catalyzes the cleavage offructose bisphosphate into two3-carbon units?

Aldolase

Which of the following is not true?

. Every reaction in a metabolic pathway must have a negativeDG, or the pathway cannot run.

Which of the following terms describes an enzyme thatcatalyzes electron transfer reactions?

dehydrogenase

Which of the following enzymes forms a thioester using acysteine residue as a key intermediate?

glyceraldehyde-3-phosphate dehydrogenase

In glycolysis, ATP is synthesized by

substrate-level phosphorylation

Enolase catalyzes

the dehydration of 2-phosphoglycerate.

The nicotinamide-binding region in glyceraldehyde-3-phosphatedehydrogenase is similar to all other NAD binding domains.

True

During glycolysis, ATP is synthesized from ADP and aphosphate group transferred from an acid anhydride.

True

What is the name of the pictured glycolytic intermediate?

3-phosphoglycerate

Which of the following is required for substrate-level phosphorylation?

The standard free energy of the hydrolysis reaction is morenegative than that for hydrolysis of the new phosphate compound being formed.

The amino acid cysteine is important in adding a secondphosphate to glyceraldehyde phosphate in the glyceraldehyde-3-phosphatedehydrogenase reaction.

True

Which of the following enzymes of glycolysis is not involved in regulation of thepathway?

Aldolase

Which of the following glycolytic enzymes forms a mixedanhydride from phosphoric acid?

glyceraldehyde-3-phosphate dehydrogenase

How many enzymes of glycolysis are control points for thepathway?

3

Which of the following enzymes catalyzes a dehydrationreaction?

Enolase

In the conversion of glyceraldehyde 3-phosphate to 1,3-bisphosphoglycerate

an aldehyde is oxidized to a carboxylic acid.

An enzyme notinvolved in the control of glycolysis is

triose phosphate isomerase.

How many different reactions involve substrate-levelphosphorylation during glycolysis?

2

The reduction of pyruvate to lactate

allows for recycling of NAD+.

Anaerobic metabolism can occur in all these organisms orcells, except:

Anaerobic metabolism can occur in all of these.

Which of the following enzymes of anaerobic metabolism is not tetrameric?

Hexokinase

Which of the following is not true?

The M4 version of lactatedehydrogenase predominates in heart tissue

During anaerobic metabolism in yeast, the carbons of glucoseend up in

both CO2 and ethanol.

Which of the following enzymes relies on thiaminepyrophosphate as a cofactor?

pyruvate decarboxylase

Fetal alcohol syndrome

can be detected by measuring the level of acetaldehyde in thebloodstream of a pregnant woman

During anaerobic metabolism in red blood cells, the carbonsof glucose end up in

lactic acid.

Alcohol dehydrogenase resembles lactate dehydrogenase in thatit

uses NAD+ as a coenzyme.

Thiamine pyrophosphate is a coenzyme

involved in transfers of two-carbon groups.

The fate of NADH from glycolysis depends on whetherconditions are anaerobic or aerobic.

True

Methanol is extremely toxic, but not directly. In the body,it is converted into formaldehyde; that's what's actually the poison. What kindof enzyme catalyses this conversion?

dehydrogenase

The percentage of energy captured as ATP during theconversion of glucose to lactate is closest to

30%

If glycolysis did not lead to the production of ATP, theoverall process would

release more energy

When humans consume ethanol, the first step in its metabolismis:

conversion to acetaldehyde

Chpt 18

Chpt 18

Which of the following statements concerning branchedpolymers like glycogen is false?

All of the reducing ends of the branched polymer areavailable to release glucose.

What is the average chain length of the branches in glycogen?

13 glucose residues

Glycogen is mainly found in

liver and muscle.

Which of the following best describes how liver suppliesother tissues with the glucose it releases from its stored glycogen?

It releases glucose into the blood.

The enzyme that catalyzes the interconversion ofglucose-1-phosphate and glucose-6-phosphate is

a mutase.

Glycolysis that starts with glycogen instead of glucose canbe considered to have a higher energy yield because:

Phosphorylase produces a glucose phosphate without spendingan ATP to do it

Which enzyme cleaves the a(1 ® 6) bonds in glycogen?

debranching enzyme

What kind of reaction is used to release glucose units fromglycogen?

phosphorolysis

The enzyme glycogen phosphorylase catalyzes a reaction in

glycogen breakdown.

If an individual lacked the debranching enzyme, the effectwould be:

the individual would not be able to completely break down aglycogen molecule

Which of the following best describes the function ofdebranching enzyme?

It transfers a set of three glucose residues from a limitbranch and then cleaves the a(1 ® 6) bond via hydrolysis.

The compound uridine diphosphate glucose (UDPG) plays a rolein

glycogen synthesis

The activity of glycogen phosphorylase depends on

a. allosteric controlb.covalent modification

Glucose-6-phosphatase activity is found associated with theendoplasmic reticulum.

True

How are the branches in glycogen produced?

A branching enzyme moves a short chain of several glucoseunits from a linear a(1,4) section of glycogen to make a new a(1,6) branchpoint.

UDP-glucose pyrophosphorylase works by this mechanism:

It adds a UMP molecule to glucose-1-phosphate by splittingout pyrophosphate.

Which of the following reactions occur when a single glucoseresidue is transferred from UDP-glucose to a growing glycogen molecule?

a. UDP is released.b. Theglucose can be attached to a #4 carbon atom in the glycogen molecule.c. UDP isreleased and the glucose is attached to a #4 carbon.*d. All ofthese events can occur when a single glucose residue is added.

Glycogen phosphorylase

a. exists in two forms, phosphorylase a and phosphorylase bb.responds differently to allosteric effectors in its phosphorylated anddephosphorylated forms

Starting from glucose and UTP and ATP, how many high-energybonds are broken/consumed to add that glucose to a glycogen molecule?

2

When glycogen synthase is phosphorylated

its activity decreases.

When glycogen phosphorylase is phosphorylated

its activity increases.

Where is the enzyme glucose-6-phosphatase located?

endoplasmic reticulum

Glycogen phosphorylase and glycogen synthase

are not activated simultaneously

Glycogen synthase and glycogen phosphorylase

are modified by the same enzymes

Hydrolysis of pyrophosphate is an important energy drivingforce in the synthesis of glycogen.

True

Which of the following isnot a control mechanism for glycogen phosphorylase?

Subunit association and dissociation.

Of the various forms of glycogen phosphorylase, the mostactive would be:

the phosphorylated R form

Branching and debranching enzymes use the exact samemechanism to add and remove the branches of the glycogen polymer.

False

The same enzymes are responsible for covalentmodifications of both glycogen synthase and glycogen phosphorylase inregulating their activity.

True

Generally speaking, the same mechanisms that activateglycogen phosphorylase will turn off glycogen synthase.

True

Which of the following isnot an advantage that glycogen provides to muscle cells in which it isstored?

It draws more water into the cells than glucose would.

Glycogen loading is particularly advantageous for providingenergy for long distance athletic events, such as running the marathon.

False

Properly used, glycogen loading by athletes is a safeprocess.

True

Which of the following molecules does not directly regulate the activity of glycogen synthase?

Glucose

There is as much energy used to add a phosphate group bymeans of phosphorolysis, as the energy required adding a phosphate using ATP.

False

Gluconeogenesis is the synthesis of

glucose from non-carbohydrate precursors

Gluconeogenesis differs from glycolysis because

a. the irreversible steps of glycolysis are bypassedb.different enzymes are involvedc. biotinis required for gluconeogenesis and not for glycolysis*d. all ofthese

Which enzyme is used in gluconeogenesis, but NOT in glycolysis?

PEP carboxykinase

The enzyme pyruvate carboxylase

requires biotin for activity

In which cellular compartment is pyruvate carboxylase found?

mitochondria

Which of the following statements concerning biotin andgluconeogenesis is false?

CO2 is incorporated into theglucose product.

The regulatory enzymes in gluconeogenesis are

glucose-6-phosphatase, fructose-1,6-bisphosphatase, pyruvate carboxylase, and phosphoenolpyruvatecarboxykinase

In gluconeogenesis, the initial reaction converts pyruvate to

oxaloacetate

The first reaction of gluconeogenesis is

a carboxylation

Which nucleotide triphosphate is hydrolysed in the conversionof oxaloacetate to phosphoenolpyruvate?

GTP

The NADH used for the reduction reactions duringgluconeogenesis usually come from this reaction:

Malate dehydrogenase activity in the cytoplasm.

Which of the following is true?

In gluconeogenesis, the effective reversal of the glycolyticreactions of hexokinase and phosphofructokinase involve the same sugarmolecules but not the exact set of substrates and products

How many ATP equivalents are expended to convert 2 pyruvatesto 1 glucose?

6

It is impossible to reverse any kinase reaction underphysiological conditions.

True

In general, opposing pathways, such as glycolysis andgluconeogenesis are not exactreversals of each other.

True

The formation and breakdown of fructose 2,6-bisphosphate

is catalyzed by the same protein dependant upon whether it isphosphorylated or not.

High concentrations of fructose-2,6-bisphopshate

stimulate glycolysis and inhibit gluconeogenesis.

The activity of the enzyme fructose 1,6-bisphosphatase is

inhibited by fructose 2,6-bisphosphate.

In the process of substrate cycling

different enzymes, subject to independent control, areresponsible for the synthesis and breakdown of the same substance.

The molecule fructose 2,6-bisphosphate:

is an important regulatory molecule in the control ofcarbohydrate metabolism

Which of the following is not true concerning control ofpyruvate kinase?

a. The phosphorylated form is less activeb. It isinhibited by ATPc. It isactivated by fructose 1,6-bisphosphated. It isinhibited by low blood glucose levels*e. All ofthese

The enzyme glucose-6-phosphatase is only found in cells whichhave this function or ability:

Ability to replenish the levels of glucose in the blood.

If you're running away from a bear,

your liver cells will be running gluconeogenesis and your legmuscle cells will be running glycolysis.

In the Cori cycle

glycolysis takes place in muscle and gluconeogenesis in theliver.

The process called substrate cycling is used to describe thisprocess:

Situations where there are two different enzymes used toreverse a specific step in a metabolic pathway.

The Cori cycle involves the following:

Conversion of lactate produced in the muscle by regenerationof glucose in the liver.

Which of the following mechanisms can be used to regulatemetabolic pathways?

a. Allosteric activators and inhibitors.b.Covalent modifications of enzymes.c. Use ofseparate enzymes at a given point in the forward and backward pathways.d.Regulation of the genes for the enzymes used in the pathway.*e. All ofthese are used to regulate metabolism.

The liver contains a special enzyme, hexokinase, to act as abackup for glucokinase when the glucose levels in the body get very high.

False

The primary function of the pentose phosphate pathway is

to synthesize NADPH and pentose phosphates.

During the pentose phosphate pathway (glucose-6-P ®ribose-5-P), is there a net oxidation of the substrate carbon atoms?

It depends on whether the glucose goes through the oxidativepart of the pathway or not.

What kind of enzyme catalyzes the following reaction?ribose-5-P « ribulose-5-P

isomerase

What kind of enzyme catalyzes the reaction ribulose-5-P «xylulose-5-P?

epimerase

Which of the following statements concerning the initialphase of the pentose phosphate pathway is false?

The process reduces glucose-6-phosphate.

In one normal cycle of the pentose phosphate pathway, theenzyme transaldolase is used twice and the enzyme transketolase is used once.

False

The oxidative reactions of the pentose phosphate pathway

produce NADPH rather than NADH.

The conversion of ribulose 5-phosphate to xylulose5-phosphate is

an epimerization

A characteristic of the reaction catalyzed by transaldolaseis

transfer of a three-carbon unit

Which of the following molecules is not a product of the pentose phosphate pathway?

glycerate-3-phosphate

Control of the entry of glucose or fructose into theoxidative portions of the pentose phosphate pathway is mostly dependent on acell's need for NADPH, rather than on the cell's need for pentoses.

True

The enzyme phosphopentose isomerase is characterized by allthe following except

it catalyzes an inversion of configuration at carbon-3

In addition to pentoses, the pentose phosphate pathwayinvolves sugars of all these sizes except:

a. 3 carbonsb. 4carbonsc. 6carbonsd. 7carbons*e. All ofthese sizes are used in this pathway.

The vitamin thiamine is important in transferring all ofthese types of groups, except:

Thiamine can transfer all of these types of groups.

All of the following sugar rearrangements are part of thepentose phosphate pathway, except.

C5 + C5 ® C6 + C4

Hemolytic anemia is associated with the pentose phosphatepathway because:

a. a deficiency of this pathway leads to a lack of NADPH inred blood cellsb. NADPHis required to reduce glutathionec. Redblood cells have minimal resources for maintaining an oxidative balance*d. all ofthese