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15 Cards in this Set

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replication bubble

a long strand of A:T pairs that form a localized zone of denaturation


-essential first step in replication of DNA

Prok: DNA Polymerase

-synthesizes 5'-->3'


-require a free 3'-hydroxyl group



lagging strand

-strand that extends 3'-->5'


-grows by the synthesis of Okazaki fragments and the subsequent covalent bonding of these short fragments

DNA Ligase

-links Okazaki fragments


-cataylzes the covalent closure of nicks in DNA by using energy from NAD or ATP

RNA Polymerase

-cataylzes the synthesis of RNA molecules from DNA templates


-initiates the synthesis of new RNA chains at specific sites on the DNA



each new DNA chain is initiated by a short..

RNA primer synthesized by DNA primase

DNA polymerase III

catalyzes the semiconservative replication of the chromosome


-catalyzes the addition of deoxyribonucleotides to RNA primers


-terminates an Okazaki fragment when it bumps into the RNA primer of the preceding Okazaki fragment

DNA Polymerase I

-excises and replaces RNA primers with DNA chains


-has 2 exonuclease activities

DNA polymerase I exonuclease activity

-5-->3 excises the RNA primer and replaces the RNA with a DNA chain


-3-->5 exonuclease activity cleaves off nucleotides from the 3' termini of DNA strands

DNA helicase

unwinds DNA using energy from ATP

SSB protein

after DNA is unwound, it has to be kept in an extended single strand state, so this protein coats the strains to maintain this

DNA Topoisomerases

the enzymes that provide the required axes of rotation during the replication of circular DNA molecules

Top 1 and Top 2

1: removes supercoils from DNA one at a time


oriduce temporary single strand breaks or nicks in DNA




2: produce transient double strand breaks in DNA and remove and introduce negative supercoils two at a time

S phase

dna replication occurs in S phase


(g1, g, s, g2, mitosis)

eukaryotes: replication protein

equivalent to ssb protein in prokaryotes, keeps unwound strands in extended state